PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32803.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27255.8 Da    PI: 6.1728
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32803.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+e+++
  KFK32803.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCN 59
                68***********************************************85 PP

2K-box49.71.6e-17911701897
       K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++++a+L +ei    + +R++ Ge+L+ L+++eLq+Le+ Le++l+++ ++K++ ++++i+elq+k  +l +enk+Lr++
  KFK32803.1  91 NTDHARLSREIADKSHRLRQMRGEELQGLNVEELQKLEKSLETGLTRVIETKSDKIMKEISELQRKGMQLMDENKRLRQQ 170
                 56789999999999999*************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.207161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.11E-39277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-31378IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.64887180IPR002487Transcription factor, K-box
PfamPF014863.3E-1693170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCNS  60
SMREVLERHN LQSKNLEKLD QPSLELQLVE NTDHARLSRE IADKSHRLRQ MRGEELQGLN  120
VEELQKLEKS LETGLTRVIE TKSDKIMKEI SELQRKGMQL MDENKRLRQQ GSQLTEENER  180
LGMQINNNVQ ERHGVAESVN VVVCEEGQSS ESITNVGNST GAPVDSESSD TSLRLGLPYG  240
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-18269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-18269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-18269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-18269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1tqe_P2e-18170170Myocyte-specific enhancer factor 2B
1tqe_Q2e-18170170Myocyte-specific enhancer factor 2B
1tqe_R2e-18170170Myocyte-specific enhancer factor 2B
1tqe_S2e-18170170Myocyte-specific enhancer factor 2B
3kov_A2e-18369268Myocyte-specific enhancer factor 2A
3kov_B2e-18369268Myocyte-specific enhancer factor 2A
3kov_I2e-18369268Myocyte-specific enhancer factor 2A
3kov_J2e-18369268Myocyte-specific enhancer factor 2A
3p57_A2e-18369268Myocyte-specific enhancer factor 2A
3p57_B2e-18369268Myocyte-specific enhancer factor 2A
3p57_C2e-18369268Myocyte-specific enhancer factor 2A
3p57_D2e-18369268Myocyte-specific enhancer factor 2A
3p57_I2e-18369268Myocyte-specific enhancer factor 2A
3p57_J2e-18369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2111710.0AF211171.1 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA, complete cds.
GenBankBT0330980.0BT033098.1 Arabidopsis thaliana unknown protein (At2g22540) mRNA, complete cds.
GenBankEU0786870.0EU078687.1 Arabidopsis thaliana short vegetative phase (SVP) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179840.21e-157MADS-box protein SVP
SwissprotQ9FVC11e-158SVP_ARATH; MADS-box protein SVP
TrEMBLA0A087GSF11e-175A0A087GSF1_ARAAL; Mads-box protein svp
STRINGAT2G22540.11e-156(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-160MIKC_MADS family protein